Atlas, At Last - Cannot Progress

Experiencing a game breaking issue right now.

On the “Atlas, at last” mission I was able to complete the mission objective “Head to secret Atlas HQ entrance”. Now, instead of “Get Vault Key fragment from Rhys” it is says “Meet up with Rhys” and he is no where to be found. When I look at the map, there is a marker on another floor above me.

Is anyone else experiencing the same issue or something similar? Any known fix?

I have this same issue, or one very similar. I had a glitch where I could not select whether or not to have Rhys keep the stache. So I quit the game and came back in. Now Rhys is nowhere to be found on the map. Restarted multiple times. Same error. Cannon progress in the game.