Have attained “Master of all I Survey” while still lacking certain Bronzes for Pandora, Prometheia" etc. Other trophies seem to be bugged also.
(Flying: throwing yourself at the ground and missing)
Had the same issue on XB1. The “Master of all” trophy seems to count locations differently to the individual planet ones. I got those later on. Note you have to go to the various slaughter grounds (Pandora off Konrad’s Hold, Promethea off Meridian Metroplex) as well for the planet trophies to unlock.
This link may be helpful:
And these posts have the count of locations for each zone on the three planets: